Depositions

Protein Structures

Since 2019 May the lab established, we have determined several protein structures by cryo-EM, x-ray crystallography and/or NMR spectroscopy. The table below has all structures we have determined; some are not in published papers, stay tuned for our updated news.

ProteinReference
Papain-like protease domain from SARS CoV2 NSP3
PDB 7D47 (X-ray)
in preparation
Filamentous form of Ecoli Glutamine Synthetase
PDB 7W85, EMDB 32352 (cryoEM)
Protein Science
(2022)
RNA polymerase in complex with polymyxin resistance PmrA
PDB 7W8C, EMDB 32354 (cryoEM)
submitted
Fibril structure of alpha-synuclein A53T
PDB 7WNZ (cryoEM)
in revision
Calcium-induced amyloid fibrill structure of alpha-synuclein A53T
PDB 7WO0 (cryoEM)
in revision
A tetra-protofilament form of hamster prion 108-144
PDB 7YAT, EDMB 33719 (cryoEM)
JACS (2022)
Cryo-EM structure of a 723-aa malate synthase G
PDB 7YQM, EMDB 34029, 34030, EMPIAR 11167 (cryoEM)
JSB (2023)
Crystal structure of malate synthase G
PDB 7YQN (X-ray)
JSB (2023)
Machine-learning designed ubiquitin variant R4
PDB 8J0A (X-ray)
in revision

Protein structures determined by me (before 2017)

Protein informationPDB IDReference
The domain III of the Japanese Encephalitis virus envelope protein1PJWJBC (2003)
Ecoli periplasmic dimeric protein YmgD
(monomeric subunit: 2LRV)
2LRM unpublished
NEDD4L HECT domain and its cognate ubiquitin variant NL.15HPKMolecular Cell (2016)
Rsp5 HECT domain and its cognate ubiquitin variant R5.45HPLMolecular Cell (2016)
WWP1 HECT domain and its cognate ubiquitin variant P1.15HPSMolecular Cell (2016)
WWP1 HECT domain, UBCH7 and its cognate ubiquitin variant P2.35HPTMolecular Cell (2016)